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GrainGenes Marker Report: k04740

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Locus	k04740
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 12.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd14f03
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = FokI SNP = A/G SNP structure (UNICODE) = ATCATTCAGGRTGTAAAATGT Parent 1 SNP sequence = ATCATTCAGGATGTAAAATGT Parent 2 SNP sequence = ATCATTCAGGGTGTAAAATGT Recognized sequence for CAPs locus = GGATGNNNNNNNNN
Probe for Locus	basd14f03
Locus	k04740
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = expressed protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - GGGGCTCAAAACCTCTAACC Right 5' - TAGTGACACAGCAACCTGGG
Sequence	AV929463
PCR size	499