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GrainGenes Marker Report: k04710

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Locus	k04710
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 110
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd11o06
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 19 ] SNP = C/A SNP structure (UNICODE) = GTAGCACTGAMATGGAAGTTC Parent 1 SNP sequence = GTAGCACTGACATGGAAGTTC Parent 2 SNP sequence = GTAGCACTGAAATGGAAGTTC SNP = T/G SNP structure (UNICODE) = TCTGCATACTKTCGATTTGGT Parent 1 SNP sequence = TCTGCATACTTTCGATTTGGT Parent 2 SNP sequence = TCTGCATACTGTCGATTTGGT SNP = A/G SNP structure (UNICODE) = ATAAAGAGGARATGGTTAGGC Parent 1 SNP sequence = ATAAAGAGGAAATGGTTAGGC Parent 2 SNP sequence = ATAAAGAGGAGATGGTTAGGC SNP = G/A SNP structure (UNICODE) = GAACGCTCACRAGGACTGAAC Parent 1 SNP sequence = GAACGCTCACGAGGACTGAAC Parent 2 SNP sequence = GAACGCTCACAAGGACTGAAC SNP structure (UNICODE) = CTCTAGGTGARAACGTGACTA Parent 1 SNP sequence = CTCTAGGTGAAAACGTGACTA Parent 2 SNP sequence = CTCTAGGTGAGAACGTGACTA
Probe for Locus	basd11o06
Locus	k04710
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0038J17.24 [Oryza sativa (japonica cultivar-group)] dbj BAA94238.1 unnamed protein product [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TGTACGCACCATGCCATATT Right 5' - TTATTTTGGGACGGATGGAG
Sequence	AV929348
PCR size	400