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GrainGenes Marker Report: k04690

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Locus	k04690
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 179.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah63c08
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = MseI SNP = T/C SNP structure (UNICODE) = AAGGTCTCATYAAAAAGGTGA Parent 1 SNP sequence = AAGGTCTCATTAAAAAGGTGA Parent 2 SNP sequence = AAGGTCTCATCAAAAAGGTGA Recognized sequence for CAPs locus = TTAA
Probe for Locus	bah63c08
Locus	k04690
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBb0103I08.5 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CTCAAAATGTCCACCCGATT Right 5' - GGCAAGAAGGGTGTCTACCA
Sequence	BJ486827
PCR size	393