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GrainGenes Marker Report: k04636

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Locus	k04636
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 118.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah60o02
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = T/G SNP structure (UNICODE) = CAAAAATGTTKGAGCTCCGTC Parent 1 SNP sequence = CAAAAATGTTTGAGCTCCGTC Parent 2 SNP sequence = CAAAAATGTTGGAGCTCCGTC SNP = T/A SNP structure (UNICODE) = CGTCAGCGATWAGGATTTCAT Parent 1 SNP sequence = CGTCAGCGATTAGGATTTCAT Parent 2 SNP sequence = CGTCAGCGATAAGGATTTCAT SNP = T/C SNP structure (UNICODE) = GTACTGTATAYTGTCACCGTA Parent 1 SNP sequence = GTACTGTATATTGTCACCGTA Parent 2 SNP sequence = GTACTGTATACTGTCACCGTA
Probe for Locus	bah60o02
Locus	k04636
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = unknown [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - TAGTACATGCGTGCCATGCT Right 5' - GTCATCATCCTCGCCTTCAC
Sequence	BJ486217
PCR size	364