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GrainGenes Marker Report: k04609

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Locus	k04609
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 131.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah60d12
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 35 ] SNP = T/C SNP structure (UNICODE) = GAGCCCTCTGYCCTTGGTCCT Parent 1 SNP sequence = GAGCCCTCTGTCCTTGGTCCT Parent 2 SNP sequence = GAGCCCTCTGCCCTTGGTCCT SNP = C/A SNP structure (UNICODE) = CCCTGAGTGCMTTGCCGCCCT Parent 1 SNP sequence = CCCTGAGTGCCTTGCCGCCCT Parent 2 SNP sequence = CCCTGAGTGCATTGCCGCCCT SNP = A/G SNP structure (UNICODE) = TGCCGCCCTCRGACGCCATGA Parent 1 SNP sequence = TGCCGCCCTCAGACGCCATGA Parent 2 SNP sequence = TGCCGCCCTCGGACGCCATGA SNP structure (UNICODE) = CGGCAGCTGCRACCTTCGCCG Parent 1 SNP sequence = CGGCAGCTGCAACCTTCGCCG Parent 2 SNP sequence = CGGCAGCTGCGACCTTCGCCG SNP = A/C SNP structure (UNICODE) = CCGCGTACAGMGGCCAGCATA Parent 1 SNP sequence = CCGCGTACAGAGGCCAGCATA Parent 2 SNP sequence = CCGCGTACAGCGGCCAGCATA SNP = T/G SNP structure (UNICODE) = CTTCATTGTAKCCTCTCATCT Parent 1 SNP sequence = CTTCATTGTATCCTCTCATCT Parent 2 SNP sequence = CTTCATTGTAGCCTCTCATCT SNP = C/G SNP structure (UNICODE) = CCCTTAACCASCTCTTCATTG Parent 1 SNP sequence = CCCTTAACCACCTCTTCATTG Parent 2 SNP sequence = CCCTTAACCAGCTCTTCATTG SNP = T/A SNP structure (UNICODE) = TTCCACCTCCWCGCCCTTAAC Parent 1 SNP sequence = TTCCACCTCCTCGCCCTTAAC Parent 2 SNP sequence = TTCCACCTCCACGCCCTTAAC SNP = G/C SNP structure (UNICODE) = CCTTGAGCGCSTCGGCAGCTG Parent 1 SNP sequence = CCTTGAGCGCGTCGGCAGCTG Parent 2 SNP sequence = CCTTGAGCGCCTCGGCAGCTG
Probe for Locus	bah60d12
Locus	k04609
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative flavonol glucosyltransferase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TGTCTAATTCAGCACCGCAG Right 5' - GACGTCAGCGAAATGTCAGA
Sequence	BJ458043
PCR size	413