Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k04597

[Submit comment/correction]

Locus	k04597
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 117.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah57a11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = A/G SNP structure (UNICODE) = ACATCAAAGGRTCACTATAAT Parent 1 SNP sequence = ACATCAAAGGATCACTATAAT Parent 2 SNP sequence = ACATCAAAGGGTCACTATAAT SNP = G/A SNP structure (UNICODE) = TGAAACTGGTRAGGAGATATA Parent 1 SNP sequence = TGAAACTGGTGAGGAGATATA Parent 2 SNP sequence = TGAAACTGGTAAGGAGATATA
Probe for Locus	bah57a11
Locus	k04597
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0454A11.15 [Oryza sativa (japonica cultivar-group)] dbj BAB64169.1 P0454A11.15 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CAACTGGGCCTTAGCAAGAG Right 5' - AAATCCAGGTCAAGTCCGTG
Sequence	BJ485470
PCR size	420