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GrainGenes Marker Report: k04579

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Locus	k04579
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 140.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah58l07
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HhaI SNP = T/C SNP structure (UNICODE) = GCTCAAACTGYGCTGACAGGC Parent 1 SNP sequence = GCTCAAACTGTGCTGACAGGC Parent 2 SNP sequence = GCTCAAACTGCGCTGACAGGC Recognized sequence for CAPs locus = GCGC
Probe for Locus	bah58l07
Locus	k04579
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = metallopeptidase M24 family protein [Arabidopsis thaliana] gb AAG33977.1 methionine aminopeptidase-like protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - CAACACCCTCTTCTTCCTCG Right 5' - TACCTCAACTTCGACGCCTT
Sequence	BJ453650
PCR size	478