Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k04489

[Submit comment/correction]

Locus	k04489
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 200.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah52o06
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HapII SNP = C/G SNP structure (UNICODE) = AGAATGGCACSGGAGACTAGA Parent 1 SNP sequence = AGAATGGCACCGGAGACTAGA Parent 2 SNP sequence = AGAATGGCACGGGAGACTAGA Recognized sequence for CAPs locus = CCGG
Probe for Locus	bah52o06
Locus	k04489
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = coatomer delta subunit [Oryza sativa (japonica cultivar-group)] sp P49661 COPD_ORYSA Coatomer delta subunit (Delta-coat protein) (Delta-COP)
Type	PCR
PCR primers	Left 5' - GTGGGTCCGGCAACTTACTA Right 5' - ATGATGGCCCTGATTCTGAC
Sequence	BJ484748
PCR size	404