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GrainGenes Marker Report: k04439

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Locus	k04439
Type	CAPS
Chromosome	7H
Map	Hv-HNxH602-7H 164
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah56g23
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 10 ] Restriction enzyme used for CAPS analysis = MvaI SNP = -/G SNP structure (UNICODE) = ACTGTTCCTG-/GATGTCGAGAA Parent 1 SNP sequence = ACTGTTCCTG-ATGTCGAGAA Parent 2 SNP sequence = ACTGTTCCTGGATGTCGAGAA Recognized sequence for CAPs locus = CCWGG SNP = G/A SNP structure (UNICODE) = GAGAAACCTGRCGAAACCGCA Parent 1 SNP sequence = GAGAAACCTGGCGAAACCGCA Parent 2 SNP sequence = GAGAAACCTGACGAAACCGCA
Probe for Locus	bah56g23
Locus	k04439
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = unknown [Aegilops tauschii]
Type	PCR
PCR primers	Left 5' - AGGACATACGAGCACGGTTT Right 5' - CGAAGAACTGCCTTCTACCG
Sequence	BJ484852
PCR size	406