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GrainGenes Marker Report: k04421

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Locus	k04421
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 290.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah54d24
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 15 ] SNP = C/A SNP structure (UNICODE) = TGCATCAAGAMTCATCCAATT Parent 1 SNP sequence = TGCATCAAGACTCATCCAATT Parent 2 SNP sequence = TGCATCAAGAATCATCCAATT SNP = T/C SNP structure (UNICODE) = GGCTCTGTGAYTCTGCATCAA Parent 1 SNP sequence = GGCTCTGTGATTCTGCATCAA Parent 2 SNP sequence = GGCTCTGTGACTCTGCATCAA SNP structure (UNICODE) = TCCGGGGCGAYGTTGGCCGCG Parent 1 SNP sequence = TCCGGGGCGATGTTGGCCGCG Parent 2 SNP sequence = TCCGGGGCGACGTTGGCCGCG SNP = A/T SNP structure (UNICODE) = GGGGGCATCCWGGGGCTCCGG Parent 1 SNP sequence = GGGGGCATCCAGGGGCTCCGG Parent 2 SNP sequence = GGGGGCATCCTGGGGCTCCGG
Probe for Locus	bah54d24
Locus	k04421
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0458E05.30 [Oryza sativa (japonica cultivar-group)] dbj BAC05630.1 P0458E05.30 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AGCTAGCCATACAAGCTCGC Right 5' - TCCATGGCTTCTGGAGTACC
Sequence	BJ485168
PCR size	425