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GrainGenes Marker Report: k04415

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Locus	k04415
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 133.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah52a14
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = A/G SNP structure (UNICODE) = TTTCTCATCGRTATCTCCCGA Parent 1 SNP sequence = TTTCTCATCGATATCTCCCGA Parent 2 SNP sequence = TTTCTCATCGGTATCTCCCGA SNP = A/C SNP structure (UNICODE) = TGTAACTTGGMACCACTCTTG Parent 1 SNP sequence = TGTAACTTGGAACCACTCTTG Parent 2 SNP sequence = TGTAACTTGGCACCACTCTTG
Probe for Locus	bah52a14
Locus	k04415
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = serine/threonine protein-like protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CAATACAGCGACGGACTCAA Right 5' - GTTTGAGGAGATGCAGAGGC
Sequence	BJ484570
PCR size	388