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GrainGenes Marker Report: k04405

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Locus	k04405
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 104.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah49g10
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 23 ] SNP = G/A SNP structure (UNICODE) = GTCTAGAGTGRAGAAATACCA Parent 1 SNP sequence = GTCTAGAGTGGAGAAATACCA Parent 2 SNP sequence = GTCTAGAGTGAAGAAATACCA SNP = T/A SNP structure (UNICODE) = CCGTAAGCCAWACTTGCAAAT Parent 1 SNP sequence = CCGTAAGCCATACTTGCAAAT Parent 2 SNP sequence = CCGTAAGCCAAACTTGCAAAT SNP structure (UNICODE) = GCTTGAATTTRAGGAGAGCAG Parent 1 SNP sequence = GCTTGAATTTGAGGAGAGCAG Parent 2 SNP sequence = GCTTGAATTTAAGGAGAGCAG SNP = T/G SNP structure (UNICODE) = AAGCAAGCCGKTGAACACAAT Parent 1 SNP sequence = AAGCAAGCCGTTGAACACAAT Parent 2 SNP sequence = AAGCAAGCCGGTGAACACAAT SNP = G/C SNP structure (UNICODE) = TCGTGAGATCSCTGGATCTCT Parent 1 SNP sequence = TCGTGAGATCGCTGGATCTCT Parent 2 SNP sequence = TCGTGAGATCCCTGGATCTCT SNP = T/C SNP structure (UNICODE) = CATCTTGCAAYGTGCGTGCCC Parent 1 SNP sequence = CATCTTGCAATGTGCGTGCCC Parent 2 SNP sequence = CATCTTGCAACGTGCGTGCCC
Probe for Locus	bah49g10
Locus	k04405
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = zinc finger (C2H2 type) family protein [Arabidopsis thaliana] gb AAD12706.2 expressed protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - AGATTTGCCCGTGGATACTG Right 5' - GTCGGGCTTGTTCTGTCAAT
Sequence	BJ484199
PCR size	370