Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k04320

[Submit comment/correction]

Locus	k04320
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 196.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah49d03
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 22 ] SNP = T/A SNP structure (UNICODE) = ACCCGAAGCAWCGGTCGCATA Parent 1 SNP sequence = ACCCGAAGCATCGGTCGCATA Parent 2 SNP sequence = ACCCGAAGCAACGGTCGCATA SNP = G/A SNP structure (UNICODE) = CCACCTCAAARATGAATGACT Parent 1 SNP sequence = CCACCTCAAAGATGAATGACT Parent 2 SNP sequence = CCACCTCAAAAATGAATGACT SNP = T/C SNP structure (UNICODE) = TTCCCCTGATYTCTGCGATCG Parent 1 SNP sequence = TTCCCCTGATTTCTGCGATCG Parent 2 SNP sequence = TTCCCCTGATCTCTGCGATCG SNP = G/T SNP structure (UNICODE) = ATGAATGACTKGGTGGGATCA Parent 1 SNP sequence = ATGAATGACTGGGTGGGATCA Parent 2 SNP sequence = ATGAATGACTTGGTGGGATCA SNP structure (UNICODE) = ACGTAGAACAKCGAATGACCA Parent 1 SNP sequence = ACGTAGAACAGCGAATGACCA Parent 2 SNP sequence = ACGTAGAACATCGAATGACCA SNP structure (UNICODE) = GCAACCCGGTRCTTCAAGTCC Parent 1 SNP sequence = GCAACCCGGTGCTTCAAGTCC Parent 2 SNP sequence = GCAACCCGGTACTTCAAGTCC
Probe for Locus	bah49d03
Locus	k04320
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0040D17.11 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TCATGGGAGACAGAGGAAGG Right 5' - GGGCTTAAGCTTCTGAGCCT
Sequence	BJ484153
PCR size	351