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GrainGenes Marker Report: k04213

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Locus	k04213
Type	CAPS
Chromosome	2H
Map	Hv-HNxH602-2H 301.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah41b23
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = TaqI SNP = A/G SNP structure (UNICODE) = TGGCATCCTCRATTGAGTCAA Parent 1 SNP sequence = TGGCATCCTCAATTGAGTCAA Parent 2 SNP sequence = TGGCATCCTCGATTGAGTCAA Recognized sequence for CAPs locus = TCGA
Probe for Locus	bah41b23
Locus	k04213
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0043A12.25 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ATGGACGTCATTCAAAAGGC Right 5' - CCCTGCATTCGTCATCCTAT
Sequence	BJ482720
PCR size	377