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GrainGenes Marker Report: k04179

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Locus	k04179
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 279.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah41n09
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 18 ] SNP = G/A SNP structure (UNICODE) = TGGCATAGGARAACACATATA Parent 1 SNP sequence = TGGCATAGGAGAACACATATA Parent 2 SNP sequence = TGGCATAGGAAAACACATATA SNP = C/A SNP structure (UNICODE) = CGAAATACCAMCAGTGAAGTG Parent 1 SNP sequence = CGAAATACCACCAGTGAAGTG Parent 2 SNP sequence = CGAAATACCAACAGTGAAGTG SNP = T/G SNP structure (UNICODE) = ACGCCTTGTTKGGGAGTCGGC Parent 1 SNP sequence = ACGCCTTGTTTGGGAGTCGGC Parent 2 SNP sequence = ACGCCTTGTTGGGGAGTCGGC SNP structure (UNICODE) = CACCAGCTCAKGACGGACCAA Parent 1 SNP sequence = CACCAGCTCATGACGGACCAA Parent 2 SNP sequence = CACCAGCTCAGGACGGACCAA SNP structure (UNICODE) = TTCACTATGARAGTCATGCAG Parent 1 SNP sequence = TTCACTATGAGAGTCATGCAG Parent 2 SNP sequence = TTCACTATGAAAGTCATGCAG
Probe for Locus	bah41n09
Locus	k04179
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBb0034I13.15 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GCCTTGGATCATCTCATCGT Right 5' - GTAGGCAAATGGCTATCCGA
Sequence	BJ482859
PCR size	381