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GrainGenes Marker Report: k03986

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Locus	k03986
Type	SNP
Chromosome	4H
Map	Hv-HNxH602-4H 27.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah29o22
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = T/C SNP structure (UNICODE) = GTAGATATCCYCTTCCCCGCC Parent 1 SNP sequence = GTAGATATCCTCTTCCCCGCC Parent 2 SNP sequence = GTAGATATCCCCTTCCCCGCC SNP = G/C SNP structure (UNICODE) = TGCAGCAGAGSCGACGGCTCA Parent 1 SNP sequence = TGCAGCAGAGGCGACGGCTCA Parent 2 SNP sequence = TGCAGCAGAGCCGACGGCTCA
Probe for Locus	bah29o22
Locus	k03986
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative homeodomain protein [Oryza sativa] gb AAK00972.1 putative homeodomain protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ATCCCGATAAACACCAACCA Right 5' - CACATCCACTTGGAGGAACA
Sequence	BJ460985
PCR size	392