Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k03863

[Submit comment/correction]

Locus	k03863
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 75.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah28l03
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AluI SNP = T/C SNP structure (UNICODE) = CACGTACCAGYTCATTAGCAC Parent 1 SNP sequence = CACGTACCAGTTCATTAGCAC Parent 2 SNP sequence = CACGTACCAGCTCATTAGCAC Recognized sequence for CAPs locus = AGCT
Probe for Locus	bah28l03
Locus	k03863
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = hypothetical protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TGCCACCTTCTCTAAGCGTT Right 5' - CATTGGCTTGTGGTGCATAC
Sequence	AV945882
PCR size	417