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GrainGenes Marker Report: k03854

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Locus	k03854
Type	SNP
Chromosome	6H
Map	Hv-HNxH602-6H 163.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah25l03
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 26 ] SNP = A/G SNP structure (UNICODE) = CTGCGAGCTCRACCGATGATT Parent 1 SNP sequence = CTGCGAGCTCAACCGATGATT Parent 2 SNP sequence = CTGCGAGCTCGACCGATGATT SNP = G/A SNP structure (UNICODE) = TGTGAGCCTCRCTGCCTTTAC Parent 1 SNP sequence = TGTGAGCCTCGCTGCCTTTAC Parent 2 SNP sequence = TGTGAGCCTCACTGCCTTTAC SNP = A/C SNP structure (UNICODE) = AAACCAAAAGMAGCGGCACAC Parent 1 SNP sequence = AAACCAAAAGAAGCGGCACAC Parent 2 SNP sequence = AAACCAAAAGCAGCGGCACAC SNP = G/C SNP structure (UNICODE) = TTGATCAATASTAGAAACTCA Parent 1 SNP sequence = TTGATCAATAGTAGAAACTCA Parent 2 SNP sequence = TTGATCAATACTAGAAACTCA SNP = T/C SNP structure (UNICODE) = AACATGTATAYGAAAAGATCA Parent 1 SNP sequence = AACATGTATATGAAAAGATCA Parent 2 SNP sequence = AACATGTATACGAAAAGATCA SNP structure (UNICODE) = ATGATTACAARAAGATCGGAG Parent 1 SNP sequence = ATGATTACAAGAAGATCGGAG Parent 2 SNP sequence = ATGATTACAAAAAGATCGGAG SNP structure (UNICODE) = TCGCATGATCRTTAAGAATGA Parent 1 SNP sequence = TCGCATGATCGTTAAGAATGA Parent 2 SNP sequence = TCGCATGATCATTAAGAATGA
Probe for Locus	bah25l03
Locus	k03854
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = vacuolar-type H+-translocating inorganic pyrophosphatase (AVPL1) [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - AAGGTGGAATAACCAGCACG Right 5' - CGGGTCATGTGCATACAGTC
Sequence	BU990814
PCR size	359