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GrainGenes Marker Report: k03846

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Locus	k03846
Type	CAPS
Chromosome	5H
Map	Hv-HNxH602-5H 217.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah26p09
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AluI SNP = T/C SNP structure (UNICODE) = TATAGATAGCYGAACAATTGC Parent 1 SNP sequence = TATAGATAGCTGAACAATTGC Parent 2 SNP sequence = TATAGATAGCCGAACAATTGC Recognized sequence for CAPs locus = AGCT
Probe for Locus	bah26p09
Locus	k03846
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Chain A, Crystal Structure Of The Ferredoxin:nadp+ Reductase From Maize Root At 1.7 Angstroms
Type	PCR
PCR primers	Left 5' - ATGGAAAACAGTGACAGGCA Right 5' - GGATTTCAACAAGTTGGCGT
Sequence	AV835961
PCR size	353