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GrainGenes Marker Report: k03844

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Locus	k03844
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 96.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah26i01
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 15 ] SNP = A/G SNP structure (UNICODE) = CTGTAAAAGARGATCAAACAG Parent 1 SNP sequence = CTGTAAAAGAAGATCAAACAG Parent 2 SNP sequence = CTGTAAAAGAGGATCAAACAG SNP = C/T SNP structure (UNICODE) = CATCATCCTTYGCTCGAGGAA Parent 1 SNP sequence = CATCATCCTTCGCTCGAGGAA Parent 2 SNP sequence = CATCATCCTTTGCTCGAGGAA SNP structure (UNICODE) = CCTCTTCATTYGACAATACAT Parent 1 SNP sequence = CCTCTTCATTCGACAATACAT Parent 2 SNP sequence = CCTCTTCATTTGACAATACAT SNP = G/A SNP structure (UNICODE) = TACGTTGGGCRGATGACAAGT Parent 1 SNP sequence = TACGTTGGGCGGATGACAAGT Parent 2 SNP sequence = TACGTTGGGCAGATGACAAGT
Probe for Locus	bah26i01
Locus	k03844
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = protein phosphatase 2C-like protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TGGTCTTCCTTCGTGGGTAA Right 5' - TGAGCATACAGCATCCCTGA
Sequence	AV835947
PCR size	470