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GrainGenes Marker Report: k03697

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Locus	k03697
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 253.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah16e04
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 20 ] SNP = T/G SNP structure (UNICODE) = TTATACCACAKGCGGCCCGGG Parent 1 SNP sequence = TTATACCACATGCGGCCCGGG Parent 2 SNP sequence = TTATACCACAGGCGGCCCGGG SNP = T/A SNP structure (UNICODE) = ACCTGTACCAWACAGAGCAGT Parent 1 SNP sequence = ACCTGTACCATACAGAGCAGT Parent 2 SNP sequence = ACCTGTACCAAACAGAGCAGT SNP = C/T SNP structure (UNICODE) = GCACCGTCAGYACAGAAGAAC Parent 1 SNP sequence = GCACCGTCAGCACAGAAGAAC Parent 2 SNP sequence = GCACCGTCAGTACAGAAGAAC SNP = C/G SNP structure (UNICODE) = TAGTAGTCATSTCTGGAAATA Parent 1 SNP sequence = TAGTAGTCATCTCTGGAAATA Parent 2 SNP sequence = TAGTAGTCATGTCTGGAAATA SNP = A/T SNP structure (UNICODE) = GAAGAACAGAWACTGAATCAG Parent 1 SNP sequence = GAAGAACAGAAACTGAATCAG Parent 2 SNP sequence = GAAGAACAGATACTGAATCAG
Probe for Locus	bah16e04
Locus	k03697
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = molybdenum cofactor biosynthesis protein Cnx1 [Hordeum vulgare]
Type	PCR
PCR primers	Left 5' - CGAAAGGAATTACTCGTGGC Right 5' - GGCTGGCAACTCTGAAGAAC
Sequence	AV835686
PCR size	359