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GrainGenes Marker Report: k03663

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Locus	k03663
Type	CAPS
Chromosome	1H
Map	Hv-HNxH602-1H 278.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah16j04
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HaeIII SNP = G/A SNP structure (UNICODE) = CCCTCAGGAARGCCAATGTGA Parent 1 SNP sequence = CCCTCAGGAAGGCCAATGTGA Parent 2 SNP sequence = CCCTCAGGAAAGCCAATGTGA Recognized sequence for CAPs locus = GGCC
Probe for Locus	bah16j04
Locus	k03663
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = unnamed protein product [Oryza sativa (japonica cultivar-group)] dbj BAA89577.1 unnamed protein product [Oryza sativa (japonica cultivar-gr
Type	PCR
PCR primers	Left 5' - TCATCTTGCCATGTGCTTGT Right 5' - CGTGGAGAAGGAAGATGAGC
Sequence	AV835696
PCR size	350