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GrainGenes Marker Report: k03551

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Locus	k03551
Type	CAPS
Chromosome	7H
Map	Hv-HNxH602-7H 232.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah11k13
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = XhoI SNP = A/G SNP structure (UNICODE) = GGCCATCCTCRAGCTGCTTGC Parent 1 SNP sequence = GGCCATCCTCAAGCTGCTTGC Parent 2 SNP sequence = GGCCATCCTCGAGCTGCTTGC Recognized sequence for CAPs locus = CTCGAG
Probe for Locus	bah11k13
Locus	k03551
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative polyubiquitin [Gossypium herbaceum] gb AAM78181.1 putative polyubiquitin [Gossypium raimondii]
Type	PCR
PCR primers	Left 5' - AGACAGTCCAGTGCGACTCA Right 5' - CTTTGAAGGGCTACGACCAG
Sequence	AV945623
PCR size	399