Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k03504

[Submit comment/correction]

Locus	k03504
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 102.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah11m03
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = AluI SNP = T/C SNP structure (UNICODE) = CAGGTGTAGCYCCATATCTGG Parent 1 SNP sequence = CAGGTGTAGCTCCATATCTGG Parent 2 SNP sequence = CAGGTGTAGCCCCATATCTGG Recognized sequence for CAPs locus = AGCT
Probe for Locus	bah11m03
Locus	k03504
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = PQ-loop repeat family protein / transmembrane family protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - GGAGAGACGGCAGATTTGAG Right 5' - GTGTACACCGTCTTCTCCGC
Sequence	AV942382
PCR size	358