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GrainGenes Marker Report: k03456

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Locus	k03456
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 166.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags9a03
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 19 ] SNP = A/G SNP structure (UNICODE) = GGCAATCTCARGGACGAGAGG Parent 1 SNP sequence = GGCAATCTCAAGGACGAGAGG Parent 2 SNP sequence = GGCAATCTCAGGGACGAGAGG SNP = C/G SNP structure (UNICODE) = AGGGTCGTCCSGGTTAGGGTC Parent 1 SNP sequence = AGGGTCGTCCCGGTTAGGGTC Parent 2 SNP sequence = AGGGTCGTCCGGGTTAGGGTC SNP structure (UNICODE) = GCAGCGAGCASATTGAAAGCA Parent 1 SNP sequence = GCAGCGAGCACATTGAAAGCA Parent 2 SNP sequence = GCAGCGAGCAGATTGAAAGCA SNP = G/C SNP structure (UNICODE) = CATACTTCTGSGTCCAGCTGC Parent 1 SNP sequence = CATACTTCTGGGTCCAGCTGC Parent 2 SNP sequence = CATACTTCTGCGTCCAGCTGC SNP = T/C SNP structure (UNICODE) = TGCGGGCTGTYGTCTCGTACT Parent 1 SNP sequence = TGCGGGCTGTTGTCTCGTACT Parent 2 SNP sequence = TGCGGGCTGTCGTCTCGTACT
Probe for Locus	bags9a03
Locus	k03456
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = ubiquitin conjugating enzyme [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ACACAGGTGCTCCAACAACA Right 5' - CTACATGCTGCAGAGACCCA
PCR size	483