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GrainGenes Marker Report: k03374

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Locus	k03374
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 196.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags6f09
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 24 ] SNP = C/G SNP structure (UNICODE) = CACCGTGCCTSATTGTACACT Parent 1 SNP sequence = CACCGTGCCTCATTGTACACT Parent 2 SNP sequence = CACCGTGCCTGATTGTACACT SNP = T/C SNP structure (UNICODE) = AGGGCCTCTAYTATGGCATCT Parent 1 SNP sequence = AGGGCCTCTATTATGGCATCT Parent 2 SNP sequence = AGGGCCTCTACTATGGCATCT SNP = C/T SNP structure (UNICODE) = ACAGAAAAGAYAATCAGCCTT Parent 1 SNP sequence = ACAGAAAAGACAATCAGCCTT Parent 2 SNP sequence = ACAGAAAAGATAATCAGCCTT SNP = A/G SNP structure (UNICODE) = TCTTCTCTCARAGAACTGCCA Parent 1 SNP sequence = TCTTCTCTCAAAGAACTGCCA Parent 2 SNP sequence = TCTTCTCTCAGAGAACTGCCA SNP = T/G SNP structure (UNICODE) = TCTGATAGCTKAAAAAATGTA Parent 1 SNP sequence = TCTGATAGCTTAAAAAATGTA Parent 2 SNP sequence = TCTGATAGCTGAAAAAATGTA SNP = C/A SNP structure (UNICODE) = TCAAAGACATMGAGCCTTGTT Parent 1 SNP sequence = TCAAAGACATCGAGCCTTGTT Parent 2 SNP sequence = TCAAAGACATAGAGCCTTGTT
Probe for Locus	bags6f09
Locus	k03374
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = unknown protein [Oryza sativa (japonica cultivar-group)] gb AAS07124.1 putative glutamyl-tRNA(Gln) amidotransferase C subunit [Oryza
Type	PCR
PCR primers	Left 5' - GCACCAAGTGGCACCTCTAT Right 5' - GAAAGCACAAGGCTCGAAAG
Sequence	AV834189
PCR size	388