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GrainGenes Marker Report: k03323

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Locus	k03323
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 274
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags5n14
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = A/G SNP structure (UNICODE) = CACACTGGGGRAAGGCCTGGC Parent 1 SNP sequence = CACACTGGGGAAAGGCCTGGC Parent 2 SNP sequence = CACACTGGGGGAAGGCCTGGC SNP = C/A SNP structure (UNICODE) = CCGTCACAAGMGTCGCAGACT Parent 1 SNP sequence = CCGTCACAAGCGTCGCAGACT Parent 2 SNP sequence = CCGTCACAAGAGTCGCAGACT
Probe for Locus	bags5n14
Locus	k03323
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = elongation factor [Triticum aestivum]
Type	PCR
PCR primers	Left 5' - AGCAATCACACGCAAGTCAC Right 5' - GTCCCATCTGGCATTGAGTT
Sequence	CA000154
PCR size	352