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GrainGenes Marker Report: k03312

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Locus	k03312
Type	CAPS
Chromosome	3H
Map	Hv-HNxH602-3H 69.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags6a04
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = ClaI SNP = C/T SNP structure (UNICODE) = AATAATTCATYGATTAACAAA Parent 1 SNP sequence = AATAATTCATCGATTAACAAA Parent 2 SNP sequence = AATAATTCATTGATTAACAAA Recognized sequence for CAPs locus = ATCGAT
Probe for Locus	bags6a04
Locus	k03312
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = 8-oxoguanine-DNA glycosylase (OGG1) [Arabidopsis thaliana] emb CAC19363.1 8-oxoguanine DNA glycosylase [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - TCACTGTTGAGCATGGGTTC Right 5' - CCAGAAGGATTGCGATTTGT
Sequence	AV919432
PCR size	387