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GrainGenes Marker Report: k03224

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Locus	k03224
Type	SNP
Chromosome	6H
Map	Hv-HNxH602-6H 102.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags39l04
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 16 ] SNP = G/A SNP structure (UNICODE) = GGTCATCCTCRGGGTCTGTCC Parent 1 SNP sequence = GGTCATCCTCGGGGTCTGTCC Parent 2 SNP sequence = GGTCATCCTCAGGGTCTGTCC SNP = T/A SNP structure (UNICODE) = TTCCTCACAAWCAGCGCTATG Parent 1 SNP sequence = TTCCTCACAATCAGCGCTATG Parent 2 SNP sequence = TTCCTCACAAACAGCGCTATG SNP = C/A SNP structure (UNICODE) = CTTTCCGCTGMAAGGCGGACA Parent 1 SNP sequence = CTTTCCGCTGCAAGGCGGACA Parent 2 SNP sequence = CTTTCCGCTGAAAGGCGGACA SNP = T/C SNP structure (UNICODE) = ATTGAACAGAYCGAGTAGAGT Parent 1 SNP sequence = ATTGAACAGATCGAGTAGAGT Parent 2 SNP sequence = ATTGAACAGACCGAGTAGAGT
Probe for Locus	bags39l04
Locus	k03224
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = NOL1/NOP2/sun family protein [Arabidopsis thaliana] ref NP_197990.2 NOL1/NOP2/sun family protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - GTGTTTCGGCGTTTCTGATT Right 5' - GGTGCTTTCTATGGTCCGAA
Sequence	BJ468649
PCR size	383