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GrainGenes Marker Report: k03197

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Locus	k03197
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 179.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags39e12
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 20 ] SNP = T/C SNP structure (UNICODE) = TGAGTACACTYATTAACCTGT Parent 1 SNP sequence = TGAGTACACTTATTAACCTGT Parent 2 SNP sequence = TGAGTACACTCATTAACCTGT SNP = A/T SNP structure (UNICODE) = ACAGAGCTTCWGATAATTGGT Parent 1 SNP sequence = ACAGAGCTTCAGATAATTGGT Parent 2 SNP sequence = ACAGAGCTTCTGATAATTGGT SNP = T/G SNP structure (UNICODE) = TGTCAATCAAKGACTTGTACT Parent 1 SNP sequence = TGTCAATCAATGACTTGTACT Parent 2 SNP sequence = TGTCAATCAAGGACTTGTACT SNP = C/A SNP structure (UNICODE) = TTCAGCAAGTMATTGAAGTGT Parent 1 SNP sequence = TTCAGCAAGTCATTGAAGTGT Parent 2 SNP sequence = TTCAGCAAGTAATTGAAGTGT SNP = C/T SNP structure (UNICODE) = ATCACGTGCCYGCAACCGCCA Parent 1 SNP sequence = ATCACGTGCCCGCAACCGCCA Parent 2 SNP sequence = ATCACGTGCCTGCAACCGCCA
Probe for Locus	bags39e12
Locus	k03197
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBb0038F03.9 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GGGTAGACCTCGATAACGCA Right 5' - ATGTAGCGGGTGACCTGTTC
Sequence	BJ451728
PCR size	381