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GrainGenes Marker Report: k03137

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Locus	k03137
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 116.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags37j11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 10 ] Restriction enzyme used for CAPS analysis = HapII SNP = G/T SNP structure (UNICODE) = ATCGCCCTCCKGATTCCTTTT Parent 1 SNP sequence = ATCGCCCTCCGGATTCCTTTT Parent 2 SNP sequence = ATCGCCCTCCTGATTCCTTTT Recognized sequence for CAPs locus = CCGG SNP = A/C SNP structure (UNICODE) = TTTGGTCTACMGGGTTACCGC Parent 1 SNP sequence = TTTGGTCTACAGGGTTACCGC Parent 2 SNP sequence = TTTGGTCTACCGGGTTACCGC
Probe for Locus	bags37j11
Locus	k03137
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Toc34-1 protein [Zea mays]
Type	PCR
PCR primers	Left 5' - TGCGATTGTTGTGTTCACCT Right 5' - CCTCGTCAGTACTCCCCATC
Sequence	BJ468198
PCR size	363