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GrainGenes Marker Report: k03135

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Locus	k03135
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 60
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags37f05
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 11 ] SNP = C/T SNP structure (UNICODE) = GAGATGTCATYGACCGTGCAT Parent 1 SNP sequence = GAGATGTCATCGACCGTGCAT Parent 2 SNP sequence = GAGATGTCATTGACCGTGCAT SNP structure (UNICODE) = AACACCCCCGYGCCTTTTCGA Parent 1 SNP sequence = AACACCCCCGCGCCTTTTCGA Parent 2 SNP sequence = AACACCCCCGTGCCTTTTCGA SNP = G/A SNP structure (UNICODE) = ATTGCGATGCRTAACGGGATA Parent 1 SNP sequence = ATTGCGATGCGTAACGGGATA Parent 2 SNP sequence = ATTGCGATGCATAACGGGATA
Probe for Locus	bags37f05
Locus	k03135
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - CGATCATCATTGCCTCATTG Right 5' - GCACAACCTCTCCTTTGACAG
Sequence	BJ468146
PCR size	356