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GrainGenes Marker Report: k03112

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Locus	k03112
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 127.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags37g15
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = BstUI SNP = G/A SNP structure (UNICODE) = GAGCTTTCGCRCTAAGTGACA Parent 1 SNP sequence = GAGCTTTCGCGCTAAGTGACA Parent 2 SNP sequence = GAGCTTTCGCACTAAGTGACA Recognized sequence for CAPs locus = CGCG
Probe for Locus	bags37g15
Locus	k03112
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = SET domain-containing protein [Arabidopsis thaliana] gb AAF97974.1 F21J9.27 [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - TTCAAACTCCCCCTCAACTG Right 5' - AGGGAAAATGGGAAGCTTGT
Sequence	BJ468167
PCR size	392