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GrainGenes Marker Report: k03104

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Locus	k03104
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 17.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags38a05
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = MboI SNP = G/A SNP structure (UNICODE) = TTCCTACTCARATCTGCCAGG Parent 1 SNP sequence = TTCCTACTCAGATCTGCCAGG Parent 2 SNP sequence = TTCCTACTCAAATCTGCCAGG Recognized sequence for CAPs locus = GATC
Probe for Locus	bags38a05
Locus	k03104
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = abscisic acid-induced protein ABA7 - barley emb CAA49471.1 18,9 KDa ABA-induced protein [Hordeum vulgare subsp. vulgare]
Type	PCR
PCR primers	Left 5' - CATGAATGCCGAAACTTCTGT Right 5' - ATTTGTGCAAAACCTCCTCG
Sequence	BU989736
PCR size	358