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GrainGenes Marker Report: k03004

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Locus	k03004
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 31.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags34a05
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = T/C SNP structure (UNICODE) = ACACGAGTCCYTTACAGAATA Parent 1 SNP sequence = ACACGAGTCCTTTACAGAATA Parent 2 SNP sequence = ACACGAGTCCCTTACAGAATA SNP = G/C SNP structure (UNICODE) = TCATACCAGTSATGCTTTTAT Parent 1 SNP sequence = TCATACCAGTGATGCTTTTAT Parent 2 SNP sequence = TCATACCAGTCATGCTTTTAT
Probe for Locus	bags34a05
Locus	k03004
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative hydrolase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GTTTTTCGCCACCTTCTTTG Right 5' - AATAAAGAGGATGCGCGTGT
Sequence	BJ466798
PCR size	480