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GrainGenes Marker Report: k02982

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Locus	k02982
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 266.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags34i11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = A/G SNP structure (UNICODE) = CGGCAAAACCRCTCTAAGGTG Parent 1 SNP sequence = CGGCAAAACCACTCTAAGGTG Parent 2 SNP sequence = CGGCAAAACCGCTCTAAGGTG SNP = T/C SNP structure (UNICODE) = TCCAAGATTAYGACACGGAGT Parent 1 SNP sequence = TCCAAGATTATGACACGGAGT Parent 2 SNP sequence = TCCAAGATTACGACACGGAGT SNP = C/T SNP structure (UNICODE) = CACATTTATTYTGTACTAGAA Parent 1 SNP sequence = CACATTTATTCTGTACTAGAA Parent 2 SNP sequence = CACATTTATTTTGTACTAGAA
Probe for Locus	bags34i11
Locus	k02982
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0060D06.5 [Oryza sativa (japonica cultivar-group)] emb CAE04513.2 OSJNBb0059K02.23 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CTGATGGAAACAACGGGTCT Right 5' - ACATGCTGTTGGCAATGTGT
Sequence	BJ466851
PCR size	485