Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k02937

[Submit comment/correction]

Locus	k02937
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 71.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags33a11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = A/G SNP structure (UNICODE) = TTTCGTCATCRTCAAAGCGAG Parent 1 SNP sequence = TTTCGTCATCATCAAAGCGAG Parent 2 SNP sequence = TTTCGTCATCGTCAAAGCGAG SNP = T/G SNP structure (UNICODE) = TCCGAGTAAGKCCGTGCAAGT Parent 1 SNP sequence = TCCGAGTAAGTCCGTGCAAGT Parent 2 SNP sequence = TCCGAGTAAGGCCGTGCAAGT
Probe for Locus	bags33a11
Locus	k02937
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative branched chain alpha-keto acid dehydrogenase E2 subunit [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GAGATTGCCGGACATAATTGA Right 5' - GCGGAGAGGAAAAGGTACG
Sequence	BJ466620
PCR size	353