GrainGenes Marker Report: k02775
Locus
k02775
Type
CAPS
Chromosome
3H
Map
Hv-HNxH602-3H 118.7
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
bags27h17
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HinfI SNP = -/A SNP structure (UNICODE) = CAGCTCTGAA-GAACCTCGTN Parent 1 SNP sequence = CAGCTCTGAA-GAACCTCGTN Parent 2 SNP sequence = CAGCTCTGAAAGAACCTCGTN Recognized sequence for CAPs locus = GANTC
Probe for Locus
bags27h17
Locus
k02775
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = nucleosome/chromatin assembly factor group C [Zea mays]
Type
PCR
PCR primers
Left 5' - CTGAGGTAAATGGCAAGGGA
Right 5' - AGGAGTGGCTCGAGAAGATG
Sequence
AV912735
PCR size
370
GrainGenes Marker Report: k02775
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