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GrainGenes Marker Report: k02687

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Locus	k02687
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 196.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags26e20
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 12 ] SNP = A/C SNP structure (UNICODE) = AAATGCTTCAMAAAGATATCA Parent 1 SNP sequence = AAATGCTTCAAAAAGATATCA Parent 2 SNP sequence = AAATGCTTCACAAAGATATCA SNP = C/T SNP structure (UNICODE) = GCGTGCATGTYACCAGTATAG Parent 1 SNP sequence = GCGTGCATGTCACCAGTATAG Parent 2 SNP sequence = GCGTGCATGTTACCAGTATAG SNP = G/A SNP structure (UNICODE) = CATCAAGAACRGTATGAACCA Parent 1 SNP sequence = CATCAAGAACGGTATGAACCA Parent 2 SNP sequence = CATCAAGAACAGTATGAACCA
Probe for Locus	bags26e20
Locus	k02687
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0008M17.13 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ACGAGACCGAGAGCACGTAT Right 5' - TAAGACGGGAAATCAGCAGG
Sequence	BJ467251
PCR size	363