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GrainGenes Marker Report: k02583

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Locus	k02583
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 250.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags22a16
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 13 ] Restriction enzyme used for CAPS analysis = HinfI SNP = C/T SNP structure (UNICODE) = AAAATATGCTYAAGAGTTCAA Parent 1 SNP sequence = AAAATATGCTCAAGAGTTCAA Parent 2 SNP sequence = AAAATATGCTTAAGAGTTCAA SNP = A/G SNP structure (UNICODE) = CAAAAGAGCARCAAAAATTCA Parent 1 SNP sequence = CAAAAGAGCAACAAAAATTCA Parent 2 SNP sequence = CAAAAGAGCAGCAAAAATTCA SNP = -/A SNP structure (UNICODE) = GAACATGATA-/AGAGGTATGTT Parent 1 SNP sequence = GAACATGATA-GAGGTATGTT Parent 2 SNP sequence = GAACATGATAAGAGGTATGTT
Probe for Locus	bags22a16
Locus	k02583
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative p21 C-terminal-binding protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CAGATCACCGTTCATCGCTA Right 5' - TACCTTTCACGGACCGCTAC
Sequence	AV918729
PCR size	464