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GrainGenes Marker Report: k02560

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Locus	k02560
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 255.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags22c13
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 11 ] SNP = G/A SNP structure (UNICODE) = TCCGTAGCTCRGGCAGGCCAA Parent 1 SNP sequence = TCCGTAGCTCGGGCAGGCCAA Parent 2 SNP sequence = TCCGTAGCTCAGGCAGGCCAA SNP structure (UNICODE) = TCTTATGGCARAATAAAAATA Parent 1 SNP sequence = TCTTATGGCAGAATAAAAATA Parent 2 SNP sequence = TCTTATGGCAAAATAAAAATA SNP = T/C SNP structure (UNICODE) = GGCCAACCAAYCTTTGAAGAT Parent 1 SNP sequence = GGCCAACCAATCTTTGAAGAT Parent 2 SNP sequence = GGCCAACCAACCTTTGAAGAT
Probe for Locus	bags22c13
Locus	k02560
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = DRL1 protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - AAGCCCATACAGGCAGTGTC Right 5' - CATTGCACATCTCAAGACGG
Sequence	AV834063
PCR size	375