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GrainGenes Marker Report: k02521

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Locus	k02521
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 99
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags21l01
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 19 ] SNP = T/G SNP structure (UNICODE) = GCCTCCGCGGKAGGTTCTTCC Parent 1 SNP sequence = GCCTCCGCGGTAGGTTCTTCC Parent 2 SNP sequence = GCCTCCGCGGGAGGTTCTTCC SNP = A/G SNP structure (UNICODE) = ACTCGTCAGCRTGCTTCTTCT Parent 1 SNP sequence = ACTCGTCAGCATGCTTCTTCT Parent 2 SNP sequence = ACTCGTCAGCGTGCTTCTTCT SNP structure (UNICODE) = TTCCTCTTGGKGCTTCCTCTT Parent 1 SNP sequence = TTCCTCTTGGTGCTTCCTCTT Parent 2 SNP sequence = TTCCTCTTGGGGCTTCCTCTT SNP = C/G SNP structure (UNICODE) = TTGGACTTCTSTTTCTCCTGC Parent 1 SNP sequence = TTGGACTTCTCTTTCTCCTGC Parent 2 SNP sequence = TTGGACTTCTGTTTCTCCTGC SNP = G/A SNP structure (UNICODE) = GCTAGCATCARCATCAGCTGC Parent 1 SNP sequence = GCTAGCATCAGCATCAGCTGC Parent 2 SNP sequence = GCTAGCATCAACATCAGCTGC
Probe for Locus	bags21l01
Locus	k02521
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = SAR DNA binding protein [Oryza sativa]
Type	PCR
PCR primers	Left 5' - TAGTAACATCCACGCTCCCC Right 5' - GTCAACGGATTGCTCCAGAT
Sequence	AJ463167
PCR size	450