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GrainGenes Marker Report: k02492

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Locus	k02492
Type	CAPS
Chromosome	6H
Map	Hv-HNxH602-6H 102.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags20p18
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = FokI SNP = G/A SNP structure (UNICODE) = GTTTCGACTCRGATGCCGCTC Parent 1 SNP sequence = GTTTCGACTCGGATGCCGCTC Parent 2 SNP sequence = GTTTCGACTCAGATGCCGCTC Recognized sequence for CAPs locus = GGATGNNNNNNNNN
Probe for Locus	bags20p18
Locus	k02492
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0019G23.6 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AACCACTGGAGCGAGGACTA Right 5' - GAATCAGTTCCAGACGCTCC
Sequence	AV918419
PCR size	394