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GrainGenes Marker Report: k02444

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Locus	k02444
Type	SNP
Chromosome	6H
Map	Hv-HNxH602-6H 33
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags20o14
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 23 ] SNP = G/A SNP structure (UNICODE) = CTAAAGAACARAATTATTCAC Parent 1 SNP sequence = CTAAAGAACAGAATTATTCAC Parent 2 SNP sequence = CTAAAGAACAAAATTATTCAC SNP structure (UNICODE) = CATGGAAAGARATATGCATAT Parent 1 SNP sequence = CATGGAAAGAGATATGCATAT Parent 2 SNP sequence = CATGGAAAGAAATATGCATAT SNP = G/C SNP structure (UNICODE) = AAATGGGGTTSTTAATGACGG Parent 1 SNP sequence = AAATGGGGTTGTTAATGACGG Parent 2 SNP sequence = AAATGGGGTTCTTAATGACGG SNP = T/G SNP structure (UNICODE) = AAAACTATCAKGGGCACTGAC Parent 1 SNP sequence = AAAACTATCATGGGCACTGAC Parent 2 SNP sequence = AAAACTATCAGGGGCACTGAC SNP = G/T SNP structure (UNICODE) = GCACTGACCAKCTTGCTTGAC Parent 1 SNP sequence = GCACTGACCAGCTTGCTTGAC Parent 2 SNP sequence = GCACTGACCATCTTGCTTGAC SNP = C/T SNP structure (UNICODE) = TCTGTGGAAGYTGGTCTTCAC Parent 1 SNP sequence = TCTGTGGAAGCTGGTCTTCAC Parent 2 SNP sequence = TCTGTGGAAGTTGGTCTTCAC
Probe for Locus	bags20o14
Locus	k02444
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = hypothetical protein [Arabidopsis thaliana] dbj BAB09721.1 gene_id:MEE6.26~unknown protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - CCTTCCTTCCTTCCTTCACC Right 5' - TGAATGCTCAGGAGAGCAGA
Sequence	AV834012
PCR size	363