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GrainGenes Marker Report: k02434

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Locus	k02434
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 75.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags21c02
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 8 ] SNP = G/C SNP structure (UNICODE) = GTATTGAGCASAGAGAGGTGG Parent 1 SNP sequence = GTATTGAGCAGAGAGAGGTGG Parent 2 SNP sequence = GTATTGAGCACAGAGAGGTGG SNP = A/G SNP structure (UNICODE) = GCATCATGGCRACCATAGAAA Parent 1 SNP sequence = GCATCATGGCAACCATAGAAA Parent 2 SNP sequence = GCATCATGGCGACCATAGAAA
Probe for Locus	bags21c02
Locus	k02434
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = zinc finger protein 3 (gb AAD27875.1) [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - TTCTCAGCGCTCTCCTTCTC Right 5' - GACACTGGGAATCCTGTTGC
Sequence	AV918456
PCR size	458