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GrainGenes Marker Report: k02429

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Locus	k02429
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 117.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags20i15
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 20 ] SNP = C/T SNP structure (UNICODE) = TTATTGTTTGYGCTGCTGCAT Parent 1 SNP sequence = TTATTGTTTGCGCTGCTGCAT Parent 2 SNP sequence = TTATTGTTTGTGCTGCTGCAT SNP = C/A SNP structure (UNICODE) = TCAACGTTACMAAACACAAGT Parent 1 SNP sequence = TCAACGTTACCAAACACAAGT Parent 2 SNP sequence = TCAACGTTACAAAACACAAGT SNP = A/G SNP structure (UNICODE) = TACAGCCAATRCAACTAGGAT Parent 1 SNP sequence = TACAGCCAATACAACTAGGAT Parent 2 SNP sequence = TACAGCCAATGCAACTAGGAT SNP = T/C SNP structure (UNICODE) = GCTGCATTGTYCACCGACCGC Parent 1 SNP sequence = GCTGCATTGTTCACCGACCGC Parent 2 SNP sequence = GCTGCATTGTCCACCGACCGC SNP = A/C SNP structure (UNICODE) = GCATCACCAAMATTGAAGTAC Parent 1 SNP sequence = GCATCACCAAAATTGAAGTAC Parent 2 SNP sequence = GCATCACCAACATTGAAGTAC
Probe for Locus	bags20i15
Locus	k02429
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative elongation factor 1 beta [Hordeum vulgare subsp. vulgare]
Type	PCR
PCR primers	Left 5' - ATGGCCAAAACTGTGATGCT Right 5' - CATAAGGCTTCCAGGTTCCA
Sequence	AV918289
PCR size	385