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GrainGenes Marker Report: k02404

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Locus	k02404
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 35.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags20h01
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HinfI SNP = A/G SNP structure (UNICODE) = TTAAAATATARATTCATTGAA Parent 1 SNP sequence = TTAAAATATAAATTCATTGAA Parent 2 SNP sequence = TTAAAATATAGATTCATTGAA Recognized sequence for CAPs locus = GANTC
Probe for Locus	bags20h01
Locus	k02404
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Type	PCR
PCR primers	Left 5' - TAGCGGGAGTGAGGAGAAAA Right 5' - ATTGTCAAGAGGGTCGTTGG
Sequence	AV918259
PCR size	391