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GrainGenes Marker Report: k02355

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Locus	k02355
Type	CAPS
Chromosome	7H
Map	Hv-HNxH602-7H 16.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags19e04
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = Cfr13I SNP = G/C SNP structure (UNICODE) = TTATAAGGCCSTAAATCTAAA Parent 1 SNP sequence = TTATAAGGCCGTAAATCTAAA Parent 2 SNP sequence = TTATAAGGCCCTAAATCTAAA Recognized sequence for CAPs locus = GGNCC
Probe for Locus	bags19e04
Locus	k02355
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0666G04.18 [Oryza sativa (japonica cultivar-group)] dbj BAB32916.1 P0666G04.18 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CCCAATAAGTTCCCATCCCT Right 5' - TTGCAGTTGGCAGTAATGGA
Sequence	AV921971
PCR size	359