Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k02338

[Submit comment/correction]

Locus	k02338
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 129.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags1l16
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HhaI SNP = C/T SNP structure (UNICODE) = AGTGCACTGGYGCTAAGTATG Parent 1 SNP sequence = AGTGCACTGGCGCTAAGTATG Parent 2 SNP sequence = AGTGCACTGGTGCTAAGTATG Recognized sequence for CAPs locus = GCGC
Probe for Locus	bags1l16
Locus	k02338
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = non-repetitive/WGA-negative nucleoporin family protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - ATTCAGATGAGGCTGGGATG Right 5' - GCTCAGATAGGTGATGCGGT
Sequence	AV921260
PCR size	422