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GrainGenes Marker Report: k02013

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Locus	k02013
Type	CAPS
Chromosome	4H
Map	Hv-HNxH602-4H 41.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags10l12
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	[ Hide all but 1 of 6 ] Restriction enzyme used for CAPS analysis = HphI SNP = T/C SNP structure (UNICODE) = GGCTGGATTTYACCTCTCTAA Parent 1 SNP sequence = GGCTGGATTTTACCTCTCTAA Parent 2 SNP sequence = GGCTGGATTTCACCTCTCTAA Recognized sequence for CAPs locus = NNNNNNNTCACC
Probe for Locus	bags10l12
Locus	k02013
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = unknown protein [Oryza sativa]
Type	PCR
PCR primers	Left 5' - CACACAATACCGTCGATTGG Right 5' - TCGTTCCCTTCCCTCTTTCT
Sequence	AV917617
PCR size	469